molecular dynamics simulation software (Molecular Dynamics Inc)
86
Structured Review
Molecular Dynamics Inc
molecular dynamics simulation software
Molecular Dynamics Simulation Software, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/molecular+dynamics+simulation+software/dynamics+molecular+simulation+software/pmc12612657-297-12-12
Average 86 stars, based on 1 article reviews
Molecular Dynamics Simulation Software, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/molecular+dynamics+simulation+software/dynamics+molecular+simulation+software/pmc12612657-297-12-12
Average 86 stars, based on 1 article reviews
molecular dynamics simulation software - by Bioz Stars,
2026-10
86/100 stars
Images
1) Product Images from "Dihydroalterperylenol from endophytic fungus Alternaria semiverrucosa and its antitumour activity uncovered by transcriptome analysis, molecular docking and molecular dynamics simulations"
Article Title: Dihydroalterperylenol from endophytic fungus Alternaria semiverrucosa and its antitumour activity uncovered by transcriptome analysis, molecular docking and molecular dynamics simulations
Journal: Molecular Medicine Reports
doi: 10.3892/mmr.2025.13740
Figure Legend Snippet: Results of molecular dynamics simulation. (A) RMSD variation curve; (B) fluctuation of amino acid residues; (C) Rg curve; (D) SASA fluctuation curve; (E) Number of H bonds. RMSD, root mean square deviation; RMSF, root mean square fluctuation; Rg, gyration; SASA, solvent-accessible surface area; H-bonds, hydrogen bonds.
Techniques Used: Solvent
Figure Legend Snippet: Molecular dynamics simulation energy analysis. (A) Energy contribution of each amino acid residue in the protein-ligand complex (BMP2-1rew); (B) Total binding energy of the protein-ligand complex (BMP2-1rew); (C) Energy contribution of each amino acid residue in the protein-ligand complex (ID1-6mgn); (D) Total binding energy of the protein-ligand complex (ID1-6mgn); (E) Energy contribution of each amino acid residue in the protein-ligand complex (TGIF2-2dmn); (F) Total binding energy of the protein-ligand complex (TGIF2-2dmn).
Techniques Used: Residue, Binding Assay
Figure Legend Snippet: Free energy landscape of molecular dynamics simulation. (A) BMP2-1rew; (B) ID1-6mgn and (C) TGIF2-2dmn. RMSD, root mean square deviation
Techniques Used:
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